Thank you very much Muppet Mark. You are great.
Now I can go home and leave exporting running on evening.
Yes this might be not greatest way exporting but I can be sure that every elemenet is showing in final pdf.
and only way I can figure this out is this way.
I have to develop this little more to print individual pages from indesign and ignoring overset text and something else.
I think that we have so many different graphics and raster images with different file types that something goes sometimes wrong
when exporting to pdf version 1.3 and rasterizing and flattening is going on.
Callig GUI seems to do the job. at least 50 pdf exported right.
Thanks.